summary.rangeList: Summarize rangeList object

In cammiller/imagingPC: Analysis of Imaging Mass Spectrometry Data using a Process Convolution Approach

Description

summary.rangeList provides basic results for an object of class rangeList.

Usage

## S3 method for class 'rangeList'
summary(object)

Arguments

object

An object of class rangeList. This is the result of a call to the estRange function.

Value

The summary.rangeList prints the estimated range for every level of the spatial variable provided to the estRange function. If no spatial varaible was provided, then only one estimated range is printed.

Examples

data("TAMdata")
# The dataset is trimmed only for the speed of the example
TAMdata <- TAMdata[TAMdata$subject < 3, ]
TAMdata <- rScale(TAMdata, subjectVar = 'subject', sampleVar = 'ROI',
                  xCoord = 'x', yCoord = 'y')
rangs <- estRange(TAMdata, outcome = 'X1282.auc', spatialVar = 'TAM',
                  semivEst = 'modulus', logTransform = TRUE)
summary(rangs)

cammiller/imagingPC documentation built on June 28, 2019, 12:04 a.m.