export_markers: Filter and save markers
In campsj/scTools: Tools to help with analysis of single-cell transcriptome datasets

Filters marker genes based on padj and k and saves them as a csv file

1 2	export_markers(sce_object, k, padj = 0.01, auroc = 0.85, folder, filename)

`sce_object`	A single cell experiment object
`k`	number of clusters
`padj`	Adjusted p value
`auroc`	Area Under Receiving Operating Curve
`folder`	Folder where to export the file to
`filename`	Name for exported csv file

csv file

campsj/scTools documentation built on May 16, 2019, 11:10 p.m.

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