plot_expression: Plot expression

In campsj/scTools: Tools to help with analysis of single-cell transcriptome datasets

Description

Plot variables or genes of interest on a variable number of principal components

Usage

plot_expression(sce_object, var, group, theme = 12, facet = "vertical",
  type = "violin", scale = "width")

Arguments

sce_object	A single cell experiment object
var	Gene or genes to plot
group	Grouping variable
theme	Size of theme
facet	Orientation of facets
type	type of plot, option for violin or boxplot
scale	Set scale of violin, if "area" (default), all violins have the same area (before trimming the tails). If "count", areas are scaled proportionally to the number of observations. If "width", all violins have the same maximum width.

Value

Gene expression plot

campsj/scTools documentation built on May 16, 2019, 11:10 p.m.