loop_gene_PC: Loop over genes and components vector

In campsj/scTools: Tools to help with analysis of single-cell transcriptome datasets

Description

Plot variables or genes of interest on a variable number of principal components

Usage

loop_gene_PC(genes, pcs, dir = dir, subdir = subdir,
  sce_object = sce_object, alpha = alpha, width = "14",
  height = "10", units = "cm")

Arguments

genes	Vector of genes names
pcs	List of principals components to plot
dir	Name of directory to save files
subdir	Name of subdirectory to save files
sce_object	A single cell experiment object
alpha	Decide the transparency of geom
width	Width of image in cm
height	Height of image in cm

Value

PCA plot of single-cell dataset with expression of selected genes as color scale

campsj/scTools documentation built on May 16, 2019, 11:10 p.m.