Description Usage Arguments Value References Examples
This package is easy to use and can be helpful to calculate deregressed proofs, and their reliabilities and weights.
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Data |
It is the name of the data file |
animalId |
It is the name of the animal's column |
sireId |
It is the name of the sire's column |
damId |
It is the name of the dam's column |
c |
It is the fraction of genetic variance not explained by markers |
h2 |
It the heritability of the trait |
traitName |
It the name of the trait |
animalEBV |
It is the name of the animal's EBV column |
sireEBV |
It is the name of the sire's EBV column |
damEBV |
It is the name of the dam's EBV column |
animalr2 |
It is the name of the animal's accuracy column |
sirer2 |
It is the name of the sire's accuracy column |
damr2 |
It is the name of the dam's accuracy column |
A data frame with deregressed proofs, reliability and weights.
Garrick, D. J., J. F. Taylor, and R. L. Fernando. 2009. Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet. Sel. Evol. 41:55.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | ## Not to run ##
## Example from Garrick et al., (2009)
Dataset=data.frame(animal="A1000", sire="S10", dam="D100", ebv_anim=15, ebv_sire=10, ebv_dam=2,
r2_anim=0.68, r2_sire=0.97, r2_dam=0.36, trait="Trait", c=0.5, h2=0.25)
wideDRP(Data = Dataset,
animalId = "animal",
sireId = "sire",
damId = "dam",
animalEBV = "ebv_anim",
sireEBV = "ebv_sire",
damEBV = "ebv_dam",
animalr2 = "r2_anim",
sirer2 = "r2_sire",
damr2 = "r2_dam",
traitName = "trait",
c = 0.5,
h2 = 0.25)
## End(Not run)
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