| add_features | Add features like stage and tumor type to an initialized... |
| allmortrates | Format life table data from IHME or other source |
| bcirates | Format female breast cancer incidence rates from SEER or... |
| build_simpop | Build a simulated population by bootstrapping from a list |
| calc_ac_lifespan | Generate an age at other-cause death from a lifetable |
| calc_ac_lifespan_pop | Use the individual calc_ac_lifespan function to estimate... |
| calcarr | Calculate absolute risk reduction |
| calcmrr | Calculate mortality rate ratios |
| check_scenarios | Check accurate specification of 'scenarios' parameter to... |
| compile_long | Compile results long |
| compile_naturalhist | Creates a 'naturalhist' object that describes key natural... |
| create_stageshift_map | Creates a "map" of how the stage shift will be applied |
| cuminc | Tally cumulative incidence of cancer |
| cummort | Tally cumulative incidence of cancer mortality |
| cumsurv_to_exprate | Convert survivals to rates |
| cumyears | Tally years lived within a follow-up period |
| format_age | Convert age-group population sizes to population proportions |
| format_bounds | Format bounds for reporting |
| format_bounds_list | Return bounds for each element of the list Options are:... |
| initialize_pop | Initialize a FEMALE population with an age structure, dates... |
| interpolate_cumsurv | Compute cumulative event-free survival curve for single-year... |
| paradd_features | Add features like stage and tumor type to an initialized... |
| parinitialize_pop | Initialize a FEMALE population with an age structure, dates... |
| parsim_multinom | Simulate from mutinomial, parallelized |
| parsimpolicies | Same as simpolicies but calling parallelized sub-functions |
| parsim_treatment_by_subgroup | Simulate treatment by subgroups - parallelized Given the... |
| partreatments_by_policy | Use sim_treatment_by_subgroup to simulate treatments,... |
| plot_rates | Plot the data in the incidence database |
| plot_results | Plot results Select on measures and panel them. Group on f-u... |
| rate_to_cumsurv | Given event rates, compute cumulative survival |
| returnstat4matrix | Compute mean and/or quantiles Return mean, lower, or upper... |
| return_value_from_id | Look up the value that corresponds to a numeric ID |
| rexp_matrix | Sim from exponential given rates in matrix form |
| running_product | Return running product of a vector, for computing cumulative... |
| shift_stages | Use indicator of stage shift to change Advanced to Early... |
| shifttreatment_indicator | Create indicator of whether treatment should be re-simulated |
| sim_clinical_incidence | Use sim_KM to efficiently simulate ages at clinical incidence... |
| sim_KM | Returns random deviates from a survival curve |
| sim_multinom | Simulate a category assignment using a multinomial... |
| simpolicies | Run the model for a series of policies and compare outcomes... |
| sim_treatment_by_subgroup | Simulate treatment by subgroups Given the proportions of... |
| stageshift_indicator | Sim indicator of stageshift from binomial |
| timetocancerdeath_by_policy | Sim time to cancer death based on policy guidelines |
| treatments_by_policy | Use sim_treatment_by_subgroup to simulate treatments |
| update_time_stageshift | For stage-shifted cases in an early detection scenario,... |
| update_treat_stageshift | For stage-shifted cases in an early detection scenario,... |
