Description Usage Arguments Value Examples

Run the model for a series of policies and compare outcomes to the base case Wrapper function for the whole model

1 2 3 4 | ```
simpolicies(scenarios, naturalhist, treatinfo, agesource = "Standard",
minage = 0, maxage = 100, incsource = "Uganda", mortsource = "Uganda",
popsize = 1e+05, sims = 5, futimes = c(5, 10),
returnstats = c("mean"), denom = 1e+05)
``` |

`scenarios` |
Data frame of scenarios to simulate (see define_scenarios). First scenario should be the base case. |

`naturalhist` |
Data frame with natural history parameters (see compile_naturalhist) |

`treatinfo` |
Data frame with treatment hazard ratios, and for each scenario, treatment proportions, by stage-subgroups. See the example and the vignette |

`agesource` |
Country to use for age structure (see data(agestructure) ) |

`minage` |
Lower age limit for population at sim start |

`maxage` |
Upper age limit for population at sim start |

`incsource` |
Country to use for incidence rates (see data(incratesf) ) |

`mortsource` |
Country to use for life table (see data(allmortratesf) ) |

`popsize` |
Size of population to simulate |

`sims` |
Number of simulations |

`futimes` |
Follow-up times at which to tally outcomes, in years |

`returnstats` |
Defaults to simulation means, but you can also ask for c("mean", "lower", "upper"). Lower and upper report the 2.5% and 97.5% quantiles respectively. |

`Denominator/population` |
size by which to report outcomes; default is 100,000 |

Data frame if returnstats="mean", or list of data frames of length(returnstats)

1 2 3 4 5 6 7 8 9 10 11 | ```
# Use example input data loaded in package, object name "ex1"
data(ex1)
ex1
# Element "pol" shows the 3 scenarios being modeled
"nh" contains the natural history information
"map" contains numeric indicators for the stage-subgroups
"tx" shows treatment hazard ratios and, for each scenario, the treatment distribution. See vignette for more details
# Run a model using ex1 inputs and the defaults
uganda_stdpop <- simpolicies(ex1$pol, ex1$nh, ex1$tx)
``` |

cancerpolicy/bcimodel documentation built on June 15, 2018, 12:31 a.m.

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