default_BSUB_config: Deafult BSUB setting to submit array jobs to LSF clusters.

In caravagn/easypar: Easy parallaleization of R functions.

Deafult BSUB setting to submit array jobs to LSF clusters.

Description

Deafult BSUB setting to submit array jobs to LSF clusters. This is handy to obtain a default input, and implement custom modificiations. These parameters are to be used by function run_lsf.

Usage

default_BSUB_config(
  J = "EASYPAR_Runner",
  P = "dummy_project",
  q = "short",
  n = 1,
  R = "\"span[hosts=1]\"",
  W = "4:00",
  o = "log/output.%J.%I",
  e = "log/errors.%J.%I"
)

Value

A named list of BSUB settings.

See Also

run_lsf

Examples

custom_BSUB = default_BSUB_config(W = '12:00')
custom_BSUB$`-J` = "Myjob"
custom_BSUB$`-P` = "my_project"
custom_BSUB$`-q` = "my_queue"

caravagn/easypar documentation built on June 4, 2022, 4:25 a.m.