default_QSUB_config: Deafult QSUB setting to submit array jobs to PBSpro clusters.
In caravagn/easypar: Easy parallaleization of R functions.
View source: R/default_QSUB_config.R
default_QSUB_config R Documentation
Deafult QSUB setting to submit array jobs to PBSpro clusters.
Description
Deafult QSUB setting to submit array jobs to
PBSpro clusters. This is handy to obtain a default input, and
implement custom modificiations. These parameters are to be
used by function run_PBSpro.
Usage
default_QSUB_config(
project = "EASYPAR_Project",
queue = "thin",
walltime = "3:00:00",
n_and_cpus = c(1, 16),
jobID = "EASYPAR_Runner",
output = "output.^array_index^.log",
error = "error.^array_index^.err",
J = ""
)
Value
A named list of QSUB settings.
See Also
run_lsf
Examples
custom_QSUB = default_QSUB_config(walltime = '12:00:00')
custom_QSUB$`-l nodes=:ppn=` = c(1,8)
custom_QSUB$`-q` = "my_queue"
caravagn/easypar documentation built on June 4, 2022, 4:25 a.m.
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View source: R/default_QSUB_config.R
| default_QSUB_config | R Documentation |
Deafult QSUB setting to submit array jobs to PBSpro clusters.
Description
Deafult QSUB setting to submit array jobs to
PBSpro clusters. This is handy to obtain a default input, and
implement custom modificiations. These parameters are to be
used by function run_PBSpro.
Usage
default_QSUB_config( project = "EASYPAR_Project", queue = "thin", walltime = "3:00:00", n_and_cpus = c(1, 16), jobID = "EASYPAR_Runner", output = "output.^array_index^.log", error = "error.^array_index^.err", J = "" )
Value
A named list of QSUB settings.
See Also
run_lsf
Examples
custom_QSUB = default_QSUB_config(walltime = '12:00:00') custom_QSUB$`-l nodes=:ppn=` = c(1,8) custom_QSUB$`-q` = "my_queue"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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