MSEQ_CRC_ADENOCARCINOMA_SET6: Multi-region whole-genome sequencing data (median coverage...
In caravagn/evoverse.datasets: Data released in the evoverse
Description
Usage
Format
References
See Also
Examples
Description
Multi-region whole-genome sequencing data (median coverage ~100x) for the Set6 sample of the MSeq cohort,
originally sequenced at lower resolution by Cross et al. (PMID 30177804).
In this new version of the data (doi:10.1101/586560) we provide somatic single nucleotide variants, absolute clonal
copy number segments and purity estimates.
Usage
1
Format
A list that contains a tibble with mutation, copy number and purity data.
References
G. Caravagna, T. Heide, M. Williams, L. Zapata, D. Nichol, K. Chkhaidze, W. Cross,
G.D. Cresswell, B. Werner, A. Acar, C.P. Barnes, G. Sanguinetti, T.A. Graham, A. Sottoriva.
Model-based tumor subclonal reconstruction. biorxiv 2019, doi:10.1101/586560
See Also
Sample 'MSEQ_CRC_ADENOCARCINOMA_SET7'.
Examples
1
2
caravagn/evoverse.datasets documentation built on Feb. 16, 2020, 4:35 a.m.
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Description Usage Format References See Also Examples
Description
Multi-region whole-genome sequencing data (median coverage ~100x) for the Set6 sample of the MSeq cohort, originally sequenced at lower resolution by Cross et al. (PMID 30177804). In this new version of the data (doi:10.1101/586560) we provide somatic single nucleotide variants, absolute clonal copy number segments and purity estimates.
Usage
1 |
Format
A list that contains a tibble with mutation, copy number and purity data.
References
G. Caravagna, T. Heide, M. Williams, L. Zapata, D. Nichol, K. Chkhaidze, W. Cross, G.D. Cresswell, B. Werner, A. Acar, C.P. Barnes, G. Sanguinetti, T.A. Graham, A. Sottoriva. Model-based tumor subclonal reconstruction. biorxiv 2019, doi:10.1101/586560
See Also
Sample 'MSEQ_CRC_ADENOCARCINOMA_SET7'.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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