API for caravagnalab/mobster
MOBSTER - Model-based tumour subclonal deconvolution
| Global functions | |
|---|---|
| .MeanVarBeta | Source code |
| .MeanVarPareto | Source code |
| .compute_fit_sqerr | Source code |
| .dbpmm.EM | Source code |
| .estBetaParams | Source code |
| .get_clusters_labels | Source code |
| .initializer | Source code |
| .log_sum_exp | Source code |
| .nonparametric_bootstrap_resamples | Source code |
| .onLoad | Source code |
| .parametric_bootstrap_resamples | Source code |
| .params_Beta | Source code |
| .params_Pareto | Source code |
| .params_Pi | Source code |
| .set_params_Beta | Source code |
| .set_params_Pareto | Source code |
| .set_params_Pi | Source code |
| .stoppingCriterion | Source code |
| Clusters | Man page Source code |
| Clusters_denovo | Man page Source code |
| LU4_lung_sample | Man page |
| LUFF76_lung_sample | Man page |
| add_color_pl | Source code |
| add_extra_plot_annotations | Source code |
| add_fill_color_pl | Source code |
| add_fill_pl | Source code |
| annotate_genes_from_locations | Source code |
| auto_setup | Source code |
| bootstrapped_statistics | Man page Source code |
| cancer_genes_dnds | Man page |
| check_input | Source code |
| choose_clusters | Man page Source code |
| compute_co_clustering | Source code |
| crash_ifnotinstalled | Source code |
| ddbpmm | Man page Source code |
| dnds | Man page Source code |
| evolutionary_parameters | Man page Source code |
| extract_dnds_input | Source code |
| fit_example | Man page |
| get_clone_trees | Man page Source code |
| get_dnds_input | Source code |
| has_drivers_annotated | Source code |
| is_bootstrap_results | Source code |
| is_bootstrap_statistics | Source code |
| is_list_mobster_fits | Source code |
| is_mobster_fit | Source code |
| is_mobster_input_dataset | Source code |
| is_reasonable_clonal_cluster | Source code |
| latent_vars | Source code |
| latent_vars_hard_assignments | Source code |
| latent_vars_scores | Source code |
| load_vcf | Man page Source code |
| m_err | Source code |
| m_inf | Source code |
| m_ok | Source code |
| m_txt | Source code |
| m_wrn | Source code |
| mobster_bootstrap | Man page Source code |
| mobster_fit | Man page Source code |
| model_selection | Source code |
| mutationrate | Source code |
| my_ggplot_theme | Source code |
| per_cluster_err | Source code |
| plot.dbpmm | Man page Source code |
| plot_NLL | Man page Source code |
| plot_bootstrap_Beta | Man page Source code |
| plot_bootstrap_coclustering | Man page Source code |
| plot_bootstrap_mixing_proportions | Man page Source code |
| plot_bootstrap_model_frequency | Man page Source code |
| plot_bootstrap_tail | Man page Source code |
| plot_entropy | Man page Source code |
| plot_fit_scores | Man page Source code |
| plot_gofit | Man page Source code |
| plot_grid | Source code |
| plot_init | Man page Source code |
| plot_latent_variables | Man page Source code |
| plot_mixing_proportions | Man page Source code |
| plot_model_selection | Man page Source code |
| print.dbpmm | Man page Source code |
| random_dataset | Man page Source code |
| rdbpmm | Man page Source code |
| rename_Beta_clusters | Source code |
| selection | Source code |
| selection2clone | Source code |
| selection2clonenested | Source code |
| smart_colors | Source code |
| subcloneparameters | Source code |
| summary.dbpmm | Man page Source code |
| tail_non_tail_mapping | Source code |
| template_density | Source code |
| template_parameters_fast_setup | Source code |
| to_string | Man page Source code |
| wrapper_dndsfit | Source code |
| wrapper_plot | Source code |
