cancer_genes_dnds: List of cancer genes to compute dnds values.

In caravagnalab/mobster: MOBSTER - Model-based tumour subclonal deconvolution

List of cancer genes to compute dnds values.

Description

List of gene ids (HuGO format) to compute dnds values. There are 2 lists available of putative driver genes, and 2 lists of essential genes; these lists have been subset to include only genes in the RefCDS database.

Drivers have been compiled in 'Martincorena, et al. Cell 171.5 (2017): 1029-1041', and in 'Tarabichi, et al. Nature Genetics 50.12 (2018): 1630'. Essential genes have been compiled using two different cell lines in 'Wang et al. Science 350.6264 (2015): 1096-1101.' and 'Bloomen et al. Science 350.6264 (2015): 1092-1096'. All lists are available and named accordingly; use 'names(cancer_genes_dnds)' to see the available names.

Usage

data(cancer_genes_dnds)

Format

List of cancer genes to compute dnds values.

Examples

data(cancer_genes_dnds)
print(lapply(cancer_genes_dnds, head))

caravagnalab/mobster documentation built on March 25, 2023, 3:40 p.m.