R/data.R

In carjed/musigtools: musigtools

#' Mutation spectra matrix for 2504 samples from the 1000 Genomes Project
#'
#' A dataset containing the frequencies of 96 3-mer subtypes
#'
#' @format A data frame with 2504 rows and 97 variables
"subtype_count_matrix"

#' Bracket-formatted subtypes
#' 
#' A dataset containing the frequencies of 96 3-mer subtypes
#'
#' @format A 96-element vector of mutation subtypes formatted as "T[C>A]G"
"subtypes_bracket"

#' signeR-formatted subtypes
#' 
#' A dataset containing the frequencies of 96 3-mer subtypes
#'
#' @format A 96-element vector of mutation subtypes formatted as "C>A:TCG"
"subtypes_signer"

#' SomaticSignatures-formatted subtypes
#' 
#' A dataset containing the frequencies of 96 3-mer subtypes
#'
#' @format A 96-element vector of mutation subtypes formatted as "CA T.G"
"subtypes_ss"

#' YAPSA-formatted subtypes
#' 
#' A dataset containing the frequencies of 96 3-mer subtypes
#'
#' @format A 96-element vector of mutation subtypes formatted as "C>A TCG"
"subtypes_yapsa"