README.md

In carlopacioni/mtraceR: an R package to analyse migrate-n output

mtraceR

mtraceR is an R package to analyse migration-n output

Quickstart

Install the package from version control from within R:

library(devtools)
install_github("carlopacioni/mtraceR")

If you are on Windows and have not used devtools before, then you have to download the Rtools executable file from CRAN webpage and run it. devtools can be installed from within R with

install.packages("devtools")

Notes

This is a development version. Functions arguments and their implementation may change with no warnings. Limited testing has been conducted with migrate-n outputs from sequence and microsatellite data only.

Documentation

Use help(package = "mtraceR") to see the documentations available. For help on specific functions use ?function_name, where function_name is the name of the function you are seeking information for.

A short tutorial can also be downloaded as PDF.

Citation

If you use mtraceR, please cite: Pacioni C, Hunt H, Allentoft ME, et al. (2015) Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial. Molecular Ecology, 24, 5813-5828.

carlopacioni/mtraceR documentation built on Nov. 3, 2023, 4:30 a.m.