runMigrate: Run migrate-n from within R

In carlopacioni/mtraceR: an R package to analyse migrate-n output

Run migrate-n from within R

Description

This is a convenience function to run migrate-n from within R

Usage

runMigrate(
  runOptions = "mpirun --use-hwthread-cpus",
  migratePath = "",
  migrateExecutable = "migrate-n-mpi",
  nProcessors = "auto",
  pathParmfile = "./",
  parmfile = "parmfile"
)

Arguments

runOptions	Character vector to pre-append to the command being issued. The default assume that you are running migrate in parallel using openMPI ('"mpirun –use-hwthread-cpus"')
migratePath	Character vector with the path to migrate excutable
migrateExecutable	The name of the executable (default 'migrate-n-mpi')
nProcessors	The number of processor to be used. If '"auto"', the maximum number of processors available will be used
pathParmfile	The path to the param file (default '"./"'
parmfile	The name of the parmfile (default '"parmfile"')

carlopacioni/mtraceR documentation built on Nov. 3, 2023, 4:30 a.m.