InvenireSRNA-package: An R package which specializes in predicting CsrA regulating...

In carltonyfakhry/InvenireSRNA: Invenire Small RNA

Description

Small RNAs (sRNAs) constitute an important class of post-transcriptional regulators that control critical cellular processes in bacteria. While recent research has led to a dramatic increase in the discovery of bacterial sRNAs, it is generally believed that the currently identified sRNAs constitute a limited subset of the bacterial sRNA repertoire. In several cases, sRNAs belonging to a specific class are already known and the challenge is to identify additional sRNAs belonging to the same class. **InvenireSRNA** is an R package for learning a classification model for a given class of sRNA thus allowing for the discovery of additional sRNAs beloning to the same class. **InvenireSRNA** also provides a pretrained model for predicting RsmA/CsrA regulating sRNAs.

Details

Package:	InvenireSRNA
Type:	Package
Version:	0.1.0
Date:	2017-08-01
License:	GPL (>= 2)

Author(s)

Carl Tony Fakhry

Maintainer: Carl Tony Fakhry <[e-mail]>

References

Carl Tony Fakhry, Prajna Kulkarni, Ping Chen, Rahul Kulkarni and Kourosh Zarringhalam (2017). "Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach." BMC Genomics, 18.

carltonyfakhry/InvenireSRNA documentation built on May 13, 2019, 12:49 p.m.