predict_fasta: Given a model for prediction, compute the probabilities of...
In carltonyfakhry/InvenireSRNA: Invenire Small RNA
Description
Usage
Arguments
Value
Author(s)
Description
Given a model for prediction, compute the probabilities of the
new sequences.
Usage
1
predict_fasta(fasta_file, InvenireSRNA_model = NULL)
Arguments
fasta_file
A path to a FASTA file containing the RNA sequences constructed with
nucleotides A,C,G,T and U.
InvenireSRNA_model
An object with S3 class InvenireSRNA to be used for prediction. If InvenireSRNA_model = NULL
then the pretrained model to predict CsrA regulating sRNAs is used.
Value
A data frame containing the mean and standard deviation of the prediction
probabilities using the given InvenireSRNA_model object.
Author(s)
Carl Tony Fakhry , Kourosh Zarringhalam, Rahul Kulkarni and Ping Chen.
carltonyfakhry/InvenireSRNA documentation built on May 13, 2019, 12:49 p.m.
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Description Usage Arguments Value Author(s)
Description
Given a model for prediction, compute the probabilities of the new sequences.
Usage
1 | predict_fasta(fasta_file, InvenireSRNA_model = NULL)
|
Arguments
fasta_file |
A path to a FASTA file containing the RNA sequences constructed with nucleotides A,C,G,T and U. |
InvenireSRNA_model |
An object with S3 class InvenireSRNA to be used for prediction. If InvenireSRNA_model = NULL then the pretrained model to predict CsrA regulating sRNAs is used. |
Value
A data frame containing the mean and standard deviation of the prediction probabilities using the given InvenireSRNA_model object.
Author(s)
Carl Tony Fakhry , Kourosh Zarringhalam, Rahul Kulkarni and Ping Chen.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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