carmencita/CHIC: Quality Control Pipeline for ChIP-Seq Data
Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.
Getting started
Browse package contents
Package details |
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| Author | Carmen Maria Livi |
| Bioconductor views | ChIPSeq QualityControl |
| Maintainer | Carmen Maria Livi <carmen.livi@external.ifom.eu> |
| License | GPL-2 |
| Version | 1.11.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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