listDatasets: Lists the IDs of samples included in the compendium

Description Usage Arguments Value Examples

View source: R/listFunctions.R

Description

Shows the IDs of all analysed ChIP-seq samples included in the compendium from ENCODE and Roadmap.

listDatasets

Usage

1
listDatasets(dataset)

Arguments

dataset

String, to specify the dataset for which the IDs have to be returned. Valid keywords are "ENCODE" and "Roadmap".

Value

"ENCODE" returns a vecor of transcription factor, chromatin mark and RNAPol2 sample IDs from ENCODE, "Roadmap" returns a vector of chromatin mark IDs from Roadmap that have been included in the compendium.

Examples

1
2
listDatasets(dataset="ENCODE")
listDatasets(dataset="Roadmap")

carmencita/CHIC documentation built on May 2, 2021, 5:09 p.m.