carmencita/CHIC: Quality Control Pipeline for ChIP-Seq Data

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Getting started

Package details

AuthorCarmen Maria Livi
Bioconductor views ChIPSeq QualityControl
MaintainerCarmen Maria Livi <carmen.livi@ifom.eu>
LicenseGPL-2
Version1.7.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("carmencita/CHIC")
carmencita/CHIC documentation built on Feb. 19, 2020, 11:47 p.m.