Files in carmencita/CHIC
Quality Control Pipeline for ChIP-Seq Data
.BBSoptions
DESCRIPTION
NAMESPACE
R/chicWrapper.R
R/createMetageneProfile.R
R/getCrossCorrelationScores.R
R/getPeakCallingScores.R
R/listFunctions.R
R/metagenePlotsForComparison.R
R/peakDownSampling.R
R/plotReferenceDistribution.R
R/predictionScore.R
R/privateFunctions.R
R/qualityScores_EM.R
R/qualityScores_GM.R
R/qualityScores_LM.R
R/qualityScores_LMgenebody.R
R/readBamFile.R
R/removeLocalTagAnomalies.R
R/tagDensity.R
README.md
inst/CITATION
man/chicWrapper.Rd
man/createMetageneProfile.Rd
man/downsample_ChIPpeaks.Rd
man/getCrossCorrelationScores.Rd
man/getPeakCallingScores.Rd
man/listAvailableElements.Rd
man/listDatasets.Rd
man/listMetrics.Rd
man/metagenePlotsForComparison.Rd
man/plotReferenceDistribution.Rd
man/predictionScore.Rd
man/qualityScores_EM.Rd
man/qualityScores_GM.Rd
man/qualityScores_LM.Rd
man/qualityScores_LMgenebody.Rd
man/readBamFile.Rd
man/removeLocalTagAnomalies.Rd
man/tagDensity.Rd
vignettes/ChIC-Vignette.Rnw
vignettes/ChIC-Vignette.bib
vignettes/ChIC-Vignette.pdf
vignettes/ChIC_Logo.png
vignettes/PTSerif.sty
vignettes/phantomCrossCorrelation_onSubset.pdf
vignettes/sectsty.sty
