compendium_profiles: Metagene profile data for chromatin marks

In carmencita/ChIC.data: ChIC package data

Description

Compendium of averaged metagene profiles for the ChIC package. Contains averaged metagene profiles for following ChIP-seq datasets from ENCODE and Roadmap Epigenomics.

Usage

data(compendium_profiles)

Format

A list of data frames with the coordinates of the metagene profile of the respective chromatin mark.

x : genomic coordinates mean : the mean of the signal intensity in the compendium sd : the standard deviation of the signal intensity in the compendium q1..q5 : being the respective quantile of the value distribution sderr : standard error setSize : setsize analysed

Details

• H2A.Z

• H2AFZ

• H2AK5ac

• H2AK9ac

• H2BK120ac

• H2BK12ac

• H2BK15ac

• H2BK20ac

• H2BK5ac

• H3K14ac

• H3K18ac

• H3K23ac

• H3K23me2

• H3K27ac

• H3K27me3

• H3K36me3

• H3K4ac

• H3K4me1

• H3K4me2

• H3K4me3

• H3K56ac

• H3K79me1

• H3K79me2

• H3K9ac

• H3K9me1

• H3K9me3

• H3T11ph

• H4K12ac

• H4K20me1

• H4K5ac

• H4K8ac

• H4K91ac

• POLR2A

• POLR2AphosphoS2

• POLR2AphosphoS5

Source

XX

carmencita/ChIC.data documentation built on April 29, 2021, 8:55 a.m.