API for carmonalab/ProjecTILs
Reference-based analysis of scRNA-seq data
| Global functions | |
|---|---|
| AddDatasetID_local | Source code |
| CheckDuplicateCellNames_local | Source code |
| FindAllMarkers.bygroup | Man page Source code |
| FindAnchorPairs_local | Source code |
| FindAnchors_local | Source code |
| FindIntegrationAnchors_local | Source code |
| FindNN_local | Source code |
| ProjecTILs.classifier | Man page Source code |
| ReadMtx.fix | Source code |
| Run.ProjecTILs | Man page Source code |
| ScoreAnchors_local | Source code |
| Sweep_local | Source code |
| TopDimFeatures_local | Source code |
| apply.ica.obj | Source code |
| apply.pca.obj.2 | Source code |
| cellstate.predict | Man page Source code |
| celltype.heatmap | Man page Source code |
| classifier.singleobject | Source code |
| combine_confidence | Source code |
| combine_labels | Source code |
| combine_labels_and_confidence | Source code |
| compute_silhouette | Man page Source code |
| convert.orthologs | Source code |
| convert_to_v3 | Source code |
| download_integrity | Source code |
| filterCells | Source code |
| find.discriminant.dimensions | Man page Source code |
| find.discriminant.genes | Man page Source code |
| get.reference.maps | Man page Source code |
| get.species | Source code |
| get_figshare_metadata | Source code |
| guess_raw_separator | Source code |
| list.reference.maps | Man page Source code |
| load.helper | Source code |
| load.reference.map | Man page Source code |
| make.projection | Man page Source code |
| make.reference | Man page Source code |
| make.umap.predict | Source code |
| make.umap.predict.2 | Source code |
| make.umap.predict.weighted.mean | Source code |
| merge.Seurat.embeddings | Man page Source code |
| plot.discriminant.3d | Man page Source code |
| plot.projection | Man page Source code |
| plot.statepred.composition | Man page Source code |
| plot.states.radar | Man page Source code |
| prcomp_seurat | Source code |
| projection.helper | Source code |
| randomSplit | Source code |
| read.sc.query | Man page Source code |
| recalculate.embeddings | Man page Source code |
| run.ica | Source code |
| run.umap.2 | Source code |
| run.umap.uwot | Source code |
| set_parall | Source code |
| sigmoid | Source code |
| silhouette_2sets | Source code |
| try.download | Source code |
