plot.states.radar: Show expression level of key genes

In carmonalab/ProjecTILs: Reference-based analysis of scRNA-seq data

Show expression level of key genes

Description

Makes a radar plot of the expression level of a set of genes. It can be useful to compare the gene expression profile of different cell states in the reference atlas vs. a projected set.

Usage

plot.states.radar(ref)

Arguments

ref	Reference object
query	Query data, either as a Seurat object or as a list of Seurat objects
labels.col	The metadata field used to annotate the clusters
ref.assay	The assay to pull the reference expression data
query.assay	The assay to pull the query expression data
genes4radar	Which genes to use for plotting
meta4radar	Which metadata columns (numeric) to use for plotting. If not NULL, genes4radar are ignored
norm.factor	Normalization factor for rescaling expression or metadata values
min.cells	Only display cell states with a minimum number of cells
cols	Custom color palette for samples in radar plot
return	Return the combined plots instead of printing them to the default device (deprecated)
return.as.list	Return plots in a list, instead of combining them in a single plot

Value

Radar plot of gene expression of key genes by cell subtype

Examples

ref <- load.reference.map()
plot.states.radar(ref)

carmonalab/ProjecTILs documentation built on April 13, 2025, 10:04 p.m.