merge.Seurat.embeddings: Merge Seurat objects, including reductions (e.g. PCA, UMAP,...

In carmonalab/ProjecTILs: Reference-based analysis of scRNA-seq data

Merge Seurat objects, including reductions (e.g. PCA, UMAP, ICA)

Description

Given two Seurat objects, merge counts and data as well as dim reductions (PCA, UMAP, ICA, etc.)

Usage

## S3 method for class 'Seurat.embeddings'
merge(x = NULL, y = NULL, merge.dr = TRUE, ...)

Arguments

x	First object to merge
y	Second object to merge
merge.dr	How to handle merging dimensional reductions (see merge.Seurat)
...	More parameters to merge function

Value

A merged Seurat object

Examples

seurat.merged <- merge.Seurat.embeddings(obj.1, obj.2)
#To merge multiple object stored in a list
seurat.merged <- Reduce(f=merge.Seurat.embeddings, x=obj.list)

carmonalab/ProjecTILs documentation built on April 13, 2025, 10:04 p.m.