plot.statepred.composition: Summarize the predicted cell states of an object

In carmonalab/ProjecTILs: Reference-based analysis of scRNA-seq data

Summarize the predicted cell states of an object

Description

Makes a barplot of the frequency of cell states in a query object.

Usage

## S3 method for class 'statepred.composition'
plot(
  ref,
  query,
  labels.col = "functional.cluster",
  cols = NULL,
  metric = c("Count", "Percent")
)

Arguments

ref	Reference object
query	Seurat object with query data
labels.col	The metadata field used to annotate the clusters (default: functional.cluster)
cols	Custom color palette for clusters
metric	One of 'Count' or 'Percent'. 'Count' plots the absolute number of cells, 'Percent' the fraction on the total number of cells.

Value

Barplot of predicted state composition

Examples

plot.statepred.composition(query_example.seurat)

carmonalab/ProjecTILs documentation built on April 13, 2025, 10:04 p.m.