Man pages for carter-allen/banyan
Bayesian network analysis of spatially resolved single cell data
| banyan_viz | Plot tissue architecture labels |
| build_knn_graph | Make KNN network |
| fit_banyan | Fit Banyan community detection model for spatially resolved... |
| get_ACC | Get ACC parameters |
| get_scores | Calculate continuous uncertainty scores |
| plot_adjacency_matrix | Plot cell-cell adjacency matrix sorted by labels from... |
| plot_connectivity_intervals | Plot community structure of cell sub-populations as posterior... |
| plot_connectivity_matrix | Plot community structure of cell sub-populations as matrix |
| plot_connectivity_network | Plot community structure parameters as a K x K network |
| plot_labels | Plot tissue labels from fit_banyan() |
| plot_propensity | Plot continuous phenotype scores from fit_banyan() |
| plot_uncertainty | Plot uncertainty of tissue labels from fit_banyan() |
