banyan_viz: Plot tissue architecture labels

In carter-allen/banyan: Bayesian network analysis of spatially resolved single cell data

Plot tissue architecture labels

Description

This function allows you to plot (static or interactive) cell spot labels and uncertainty measures

Usage

banyan_viz(
  fit,
  pt.size = 1,
  interactive = FALSE,
  shade_uncertainty = FALSE,
  feature = NULL
)

Arguments

fit	A list returned by fit_banyan()
pt.size	The size of each cell spot point
interactive	Logical parameter controlling static or interactive nature of plot
shade_uncertainty	Logical parameter for shading of cell spots by posterior uncertainty. Must run get_scores() first.
feature	A user-provided feature (e.g., gene of interest) to visualize over tissue spaces instead of sub-population labels.

Value

A ggplot object or shiny app window

carter-allen/banyan documentation built on Nov. 30, 2022, 11:58 p.m.