plot_adjacency_matrix: Plot cell-cell adjacency matrix sorted by labels from...
In carter-allen/banyan: Bayesian network analysis of spatially resolved single cell data
View source: R/plot_adjacency_matrix.R
plot_adjacency_matrix R Documentation
Plot cell-cell adjacency matrix sorted by labels from fit_banyan()
Description
This function allows you to visualize the inferred adjacency matrix after running fit_banyan()
Usage
plot_adjacency_matrix(fit, layer = "expression")
Arguments
fit
A list returned by fit_banyan(). Must have slots named "A" and "z".
layer
Either "expression" (default) or "spatial" for which adjacency network to use
Value
A ggplot object
carter-allen/banyan documentation built on Nov. 30, 2022, 11:58 p.m.
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View source: R/plot_adjacency_matrix.R
| plot_adjacency_matrix | R Documentation |
Plot cell-cell adjacency matrix sorted by labels from fit_banyan()
Description
This function allows you to visualize the inferred adjacency matrix after running fit_banyan()
Usage
plot_adjacency_matrix(fit, layer = "expression")
Arguments
fit |
A list returned by fit_banyan(). Must have slots named "A" and "z". |
layer |
Either "expression" (default) or "spatial" for which adjacency network to use |
Value
A ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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