KSEA.Scores.2: One of the 3 datasets for heatmap plotting

In casecpb/KSEAapp: Kinase-Substrate Enrichment Analysis

Description

A sample KSEA.Scores output generated from the KSEA.Scores() function (or alternatively, the "KSEA Kinase Scores.csv" output from the KSEA.Complete() function, loaded into R)

Usage

data(KSEA.Scores.2)

Format

dataframe containing 7 columns in the exact order as listed below.

• "KinaseGene" the HUGO gene name of the kinase

• "mS" the mean log2FC of all the kinase's identified substrates

• "Enrichment" the enrichment score (refer to Casado et al. (2013) Sci. Signal., 6, rs6-rs6)

• "m" the number of experimentally-identifed substrates annotating to that kinase

• "z.score" the normalized kinase score

• "p.value" the statistical assessment of the kinase score

• "FDR" the p-value adjusted for multiple hypothesis testing by the Benjamin-Hochberg method

References

unpublished data

casecpb/KSEAapp documentation built on May 6, 2019, 1:31 a.m.