difference_from_calibrated: Assesses how much phy deviates from an ultrametric tree
In caseywdunn/hutan: A Collection of Tools for Phylogenetic Tree Manipulation
Description
Usage
Arguments
Value
View source: R/utility_functions.R
Description
Assesses how much phy deviates from an ultrametric tree
Usage
1
difference_from_calibrated(phy, model = "discrete", ...)
Arguments
phy
A phylo object
model
The model used for fitting. "discrete" is used by default for speed
...
Additional chronos arguments
Value
The sum of absolute changes in branch length required
to make an ape::chronos time calibrated tree, normalized by the total branch
length of the calibrated tree. The higher the value, the more the
tree deviates from the calibrated tree.
caseywdunn/hutan documentation built on June 12, 2020, 3:12 a.m.
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Description Usage Arguments Value
View source: R/utility_functions.R
Description
Assesses how much phy deviates from an ultrametric tree
Usage
1 | difference_from_calibrated(phy, model = "discrete", ...)
|
Arguments
phy |
A phylo object |
model |
The model used for fitting. "discrete" is used by default for speed |
... |
Additional chronos arguments |
Value
The sum of absolute changes in branch length required to make an ape::chronos time calibrated tree, normalized by the total branch length of the calibrated tree. The higher the value, the more the tree deviates from the calibrated tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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