Description Usage Arguments Value Examples
Generates the "zero-constrained" tree described by Susko 2014 (http://dx.doi.org/10.1093/molbev/msu039)
1 | zero_constrained(phy_resolved, phy_constraint, epsilon = 1e-06)
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phy_resolved |
A fully resolved phylogeny stored as a phylo object, e.g. an ML tree. |
phy_constraint |
A partially resolved constraint tree. |
epsilon |
The value to replace the branch length with |
A phylo object containing a tree that is the same as phy_resolved, except that the length of edges that are incompatible with phy_constraint are replaced with epsilon.
1 2 3 |
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