breastSubtypes: Breast cancer subtypes

In cbg-ethz/TiMEx: Finding Mutually Exclusive Groups of Alterations in Cancer Datasets

Description

Dataset containing binary alteration patterns for the breast cancer subtypes LuminalA, LuminalB, Her2, and Basal2, downloaded from cBioPortal (TCGA) in July 2014, and preprocessed as described in Constantinescu et al.: TiMEx: A Waiting Time Model for Mutually Exclusive Cancer Alterations. Bioinformatics (2015).

Format

breastSubtypes is a list with 4 elements, corresponding to the 4 breast cancer subtypes. Each element is a binary matrix with 537 columns, as follows: breastSubtypes$luminalA consists of 222 rows, breastSubtypes$luminalB consists of 125 rows, breastSubtypes$Her2 consists of 55 rows, and breastSubtypes$Basal consists of 76 rows.

Source

http://www.cbioportal.org/study.do?cancer_study_id=brca_tcga

cbg-ethz/TiMEx documentation built on May 13, 2019, 1:50 p.m.