plotGroupByName: Plots a Mutually Exclusive group
In cbg-ethz/TiMEx: Finding Mutually Exclusive Groups of Alterations in Cancer Datasets

Description Usage Arguments Details Value Author(s) References See Also Examples

plotGroupByName plots a mutually exclusive group (including the frequencies of the genes), given the names of the genes in the group.

1	plotGroupByName(group, mat)

`group`	vector of gene names to be plotted
`mat`	binary alteration matrix, with rows representing patients and columns representing genes

The plotting is done based on the function image.

None

Simona Cristea, scristea@jimmy.harvard.edu

'Constantinescu et al.: TiMEx: A Waiting Time Model for Mutually Exclusive Cancer Alterations. Bioinformatics (2015).

the wrapper function TiMEx for identifying mutually exclusive groups in a binary dataset with the TiMEx model.

# Plot the group consisting of the copy number aberrations of MIEN1 and 
# CDKN1B, and the point mutations of CDH1, GATA3, and MAP3K1, in breast 
# cancer.
data(breast)
group<-c('MIEN1-CNA','CDH1-Mut','GATA3-Mut','MAP3K1-Mut','CDKN1B-CNA')
plotGroupByName(group,breast)