clinical_data: Swiss clinical data
In cbg-ethz/WWdPCR: Analysis of Drop-Off Duplex dPCR Assays
Description
Usage
Format
Source
Description
A dataset containing Swiss clinical sequencing data used in the publication:
Caduff, Lea, David Dreifuss, Tobias Schindler, Alexander J. Devaux,
Pravin Ganesanandamoorthy, Anina Kull, Elyse Stachler et al.
"Inferring Transmission Fitness Advantage of SARS-CoV-2 Variants of Concern
in Wastewater Using Digital PCR."
medRxiv (2021).
Usage
1
Format
A data frame with 4037 obs. of 6 variables.
- division
factor with 27 levels, the Swiss canton
- date
factor with 424 levels, representing the date of sampling
- HV6970del
the count of sequences with the S-gene HV69-70 deletion
- ORF1adel
the count of sequences with the ORF1a deletion
- B117
the count of sequences determined to be B.1.1.7 (Alpha)
- Tot
the total count of sequences
Source
cbg-ethz/WWdPCR documentation built on Jan. 23, 2022, 2:45 p.m.
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Description Usage Format Source
Description
A dataset containing Swiss clinical sequencing data used in the publication: Caduff, Lea, David Dreifuss, Tobias Schindler, Alexander J. Devaux, Pravin Ganesanandamoorthy, Anina Kull, Elyse Stachler et al. "Inferring Transmission Fitness Advantage of SARS-CoV-2 Variants of Concern in Wastewater Using Digital PCR." medRxiv (2021).
Usage
1 |
Format
A data frame with 4037 obs. of 6 variables.
- division
factor with 27 levels, the Swiss canton
- date
factor with 424 levels, representing the date of sampling
- HV6970del
the count of sequences with the S-gene HV69-70 deletion
- ORF1adel
the count of sequences with the ORF1a deletion
- B117
the count of sequences determined to be B.1.1.7 (Alpha)
- Tot
the total count of sequences
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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