Man pages for cbg-ethz/epiNEM
epiNEM

AddLogicGatesextend model with node representing logic gate
createExtendedAdjacencyCreate an extended adjacency matrix
CreateRandomGraphCreate a random graph
CreateTopologycreate topology for a randomly generated pathway topology
epiAnnoPlots logical gate data annotation. The 8 heatmaps visualize...
epiNEMEpistatic NEMs - main function. This function contains the...
epiScreenThis function is used to analyse knock-out screens with...
ExtendTopologyExtending topology of normal "nem"
GenerateDataGenerate data from extended model. Given a model created from...
HeatmapOPheatmap function based on the lattice package more...
MLLEvaluation of graphs
plot.epiNEMPlots the winning pathway structure
plot.epiScreenPlots the sresults of a systematic knock-out screen
plot.epiSimPlots the simulation results
sameith_GOgraph-based GO similarity scores, string GO annotations for...
sameith_stringsig. of string interaction scores for Sameith et al., 2015...
samscreenExample data: epiNEM results for the Sameith et al., 2015...
simExample data: simulation results Contains simulation results....
SimEpiNEMCompares different network reconstruction algorithm on...
wageningen_GOgraph-based GO similarity scores, string GO annotations for...
wageningen_stringsig. of string interaction scores for van Wageningen et al.,...
wagscreenExample data: epiNEM results for the Wageningen et al., 2010...
cbg-ethz/epiNEM documentation built on June 24, 2017, 9:02 p.m.