plot.epiScreen: Plot screen.

In cbg-ethz/epiNEM: epiNEM

Plot screen.

Description

Plots the sresults of a systematic knock-out screen

Usage

## S3 method for class 'epiScreen'
plot(
  x,
  global = TRUE,
  ind = NULL,
  colorkey = TRUE,
  cexGene = 1,
  off = 0.05,
  cexLegend = 1,
  ...
)

Arguments

x	object of class epiScreen
global	plot global distribution or for each pair (FALSE)
ind	index of pairs to plot
colorkey	if TRUE prints colorkey
cexGene	size of modulator annotation
off	relative distance from the gene names to the respective likelihoods
cexLegend	font size of the legend
...	other arguments

Value

plot(s) of an epiNEM screen analysis

Examples

data <- matrix(sample(c(0,1), 100*9, replace = TRUE), 100, 9)
colnames(data) <- c("A.B", "A.C", "B.C", "A", "B", "C", "D", "E", "G")
rownames(data) <- paste("E", 1:100, sep = "_")
res <- epiScreen(data)
plot(res)
plot(res, global = FALSE, ind = 1:3)

cbg-ethz/epiNEM documentation built on Nov. 6, 2024, 4:21 a.m.