GenerateData: Generate data from extended model.

In cbg-ethz/epiNEM: epiNEM

Generate data from extended model.

Description

Given a model created from CreateTopology and ExtendTopology, this function creeates acorresponding artificial data matrix, which is used as a ground truth for simulation studies.

Usage

GenerateData(model, extTopology, FPrate, FNrate, replicates)

Arguments

model	model of a topology from CreateTopology
extTopology	extended topology
FPrate	false positive rate
FNrate	false negative rate
replicates	number of replicates

Value

data matrix with effect reporters as rows and knock-downs (including double kock-downs) as columns.

Author(s)

Madeline Diekmann

See Also

CreateTopology

Examples

topology <-
CreateTopology(3, 1, force = TRUE)
topology <-
unlist(unique(topology), recursive = FALSE)
extTopology <-
ExtendTopology(topology$model, 100)
sortedData <-
GenerateData(topology$model, extTopology, 0.05, 0.13, 3)

cbg-ethz/epiNEM documentation built on Nov. 9, 2023, 8:56 p.m.