annotate.gsp-methods: annotate.gsp

In cbg-ethz/gespeR: Gene-Specific Phenotype EstimatoR

Description

Query Biomart HGNC symbols for the entrez identifiers of estimated GSPs. Currently, only implemented for species "hsapiens".

Usage

## S4 method for signature 'Phenotypes'
annotate.gsp(object, organism = "hsapiens")

## S4 method for signature 'gespeR'
annotate.gsp(object, organism = "hsapiens")

Arguments

object	A gespeR or Phenotypes object
organism	String indicating the biomaRt organism

Value

data.frame containing gene identifier, gene symbol and phenotypic score

Author(s)

Fabian Schmich

See Also

gsp

ssp

scores

Examples

data(stabilityfits)
 gspA <- gsp(stabilityfits$A)
## Not run: 
 annotate.gsp(gspA)

## End(Not run)

cbg-ethz/gespeR documentation built on May 13, 2019, 2:02 p.m.