API for cbg-ethz/pareg
Pathway enrichment using a regularized regression approach
| Global functions | |
|---|---|
| .as.family | Source code |
| .edgenet | Source code |
| .edgenet.x.penalty | Source code |
| .edgenet.y.penalty | Source code |
| .get.params | Source code |
| .lasso.penalty | Source code |
| as.data.frame.pareg | Man page Source code |
| as_dense_sim | Man page Source code |
| as_enrichplot_object | Man page Source code |
| bernoulli | Man page Source code |
| bernoulli.loss | Source code |
| beta | Man page Source code |
| beta.loss | Source code |
| beta_phi_lm | Man page Source code |
| beta_phi_var | Man page Source code |
| cast_float | Source code |
| check.dimensions | Source code |
| check.graphs | Source code |
| check.matrices | Source code |
| check.param | Source code |
| cluster_apply | Man page Source code |
| coef.cv_edgenet | Source code |
| coef.edgenet | Source code |
| compute_norm_laplacian | Source code |
| compute_term_similarities | Man page Source code |
| constant_float | Source code |
| create_model_df | Man page Source code |
| cross.validate | Source code |
| cv_edgenet | Man page |
| cv_edgenet,matrix,matrix-method | Man page |
| cv_edgenet,matrix,numeric-method | Man page |
| cv_edgenet_gridsearch | Source code |
| cv_edgenet_gridsearch_lsf | Source code |
| cv_edgenet_optim | Source code |
| cv_edgenet_post_process | Source code |
| edgenet | Man page |
| edgenet,matrix,matrix-method | Man page |
| edgenet,matrix,numeric-method | Man page |
| edgenet.loss | Source code |
| exp | Source code |
| family | Man page Source code |
| fit | Source code |
| gaussian | Man page Source code |
| gaussian.loss | Source code |
| gcdf | Source code |
| generate_similarity_matrix | Man page Source code |
| get.family | Source code |
| identity | Source code |
| init_matrix | Source code |
| init_vector | Source code |
| init_zero_scalar | Source code |
| intercept | Source code |
| intercept.matrix | Source code |
| inverse | Source code |
| inverse.exp | Source code |
| inverse.sqrt | Source code |
| is.positive.numeric | Source code |
| jaccard | Man page Source code |
| linear.predictor | Source code |
| logistic | Source code |
| model | Source code |
| not.supported.yet | Source code |
| optim | Source code |
| overlap_coefficient | Man page Source code |
| pareg | Man page Source code |
| pareg_env | Man page |
| pathway_similarities | Man page |
| pipe_split | Source code |
| plot.pareg | Man page Source code |
| plot_pareg_with_args | Man page Source code |
| rss | Source code |
| similarity_sample | Man page Source code |
| transform_y | Man page Source code |
| warn.experimental | Source code |
