API for cbl-imagine/cellID
Unbiased Extraction of Single Cell Identity using Multiple Correspondence Analysis

Global functions
CellID Man page
CellID-package Man page
CellIDphyper Source code
DimPlotMC Man page Source code
DistSort Man page Source code
GO_biological Man page
GetCellGeneDistance Man page Source code
GetCellGeneDistance.Seurat Man page Source code
GetCellGeneDistance.SingleCellExperiment Man page Source code
GetCellGeneRanking Man page Source code
GetCellGeneRanking.Seurat Man page Source code
GetCellGeneRanking.SingleCellExperiment Man page Source code
GetCellGeneSet Man page Source code
GetCellGeneSet.Seurat Man page Source code
GetCellGeneSet.SingleCellExperiment Man page Source code
GetGSEAMatrix Man page Source code
GetGeneCellCoordinates Man page Source code
GetGeneCellCoordinates.Seurat Source code
GetGeneCellCoordinates.SingleCellExperiment Source code
GetGroupCoordinates Man page Source code
GetGroupCoordinates.Seurat Man page Source code
GetGroupCoordinates.SingleCellExperiment Man page Source code
GetGroupCoordinates.matrix Man page Source code
GetGroupGeneDistance Man page Source code
GetGroupGeneDistance.Seurat Man page Source code
GetGroupGeneDistance.SingleCellExperiment Man page Source code
GetGroupGeneRanking Man page Source code
GetGroupGeneRanking.Seurat Man page Source code
GetGroupGeneRanking.SingleCellExperiment Man page Source code
GetGroupGeneSet Man page Source code
GetGroupGeneSet.Seurat Man page Source code
GetGroupGeneSet.SingleCellExperiment Man page Source code
Hallmark Man page
MCAStep1 Source code
MCAStep2 Source code
RunCellGSEA Man page Source code
RunCellGSEA.Seurat Man page Source code
RunCellGSEA.SingleCellExperiment Man page Source code
RunCellHGT Man page Source code
RunCellHGT.Seurat Man page Source code
RunCellHGT.SingleCellExperiment Man page Source code
RunGeneIntersection Man page Source code
RunGeneIntersection.Seurat Man page Source code
RunGeneIntersection.SingleCellExperiment Man page Source code
RunGroupGSEA Man page Source code
RunGroupGSEA.Seurat Man page Source code
RunGroupGSEA.SingleCellExperiment Man page Source code
RunMCA Man page Source code
RunMCA.Seurat Man page Source code
RunMCA.SingleCellExperiment Man page Source code
RunMCA.matrix Man page Source code
RunMCDMAP Man page Source code
RunMCDMAP.Seurat Man page Source code
RunMCDMAP.SingleCellExperiment Man page Source code
RunMCTSNE Man page Source code
RunMCTSNE.Seurat Man page Source code
RunMCTSNE.SingleCellExperiment Man page Source code
RunMCUMAP Man page Source code
RunMCUMAP.Seurat Man page Source code
RunMCUMAP.SingleCellExperiment Man page Source code
checkCellIDArg Man page Source code
checkCellIDArg.Seurat Man page Source code
checkCellIDArg.SingleCellExperiment Man page Source code
cleanMem Source code
fastPDist Source code
fgseaCellID Man page Source code
ggColorHue Man page Source code
gseaHeatmap Man page Source code
import Man page Source code
integrateGSEASeurat Man page Source code
makeChunk Source code
pairDist Man page Source code
pheatColorHue Man page Source code
plotReducedDimMC Man page Source code
setDimMCSlot Man page Source code
setDimMCSlot.Seurat Man page Source code
setDimMCSlot.SingleCellExperiment Man page Source code
seuratPbmc Man page
cbl-imagine/cellID documentation built on Nov. 12, 2019, 1:36 a.m.