Description Usage Arguments Value

Small intermediate function for euclidean distance calculation between MCA feture coordinates and cell coordinates.

1 2 3 4 5 6 7 8 9 | ```
GetCellGeneDistance(X, reduction, dims, features, cells)
## S3 method for class 'Seurat'
GetCellGeneDistance(X, reduction = "mca", dims,
features = NULL, cells = NULL)
## S3 method for class 'SingleCellExperiment'
GetCellGeneDistance(X, reduction = "MCA",
dims, features = NULL, cells = NULL)
``` |

`X` |
Seurat or SingleCell Experiment Object |

`reduction` |
Which dimensionality reduction to use, must be based on MCA. |

`dims` |
A vector of integers indicating which dimensions to use with reduction embeddings and loadings for distance calculation. |

`features` |
Character vector of feature names to subset feature coordinates. If not specified will take all features available from specified reduction Loadings. |

`cells` |
Character vector of cell names to subset cell coordinates. If not specified will take all cells available from specified reduction Embeddings. |

Distance Matrix with genes at row and cellls at column

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