cellID-package: Multiple Correspondence Analysis on Single Cell for Joint...

Description Author(s) References See Also

Description

CellID take as input a matrix of expression level generated by SCRNA-Seq and performs dimensionality reduction using Multiple Corespondance Analysis. This enables a representation of both genes and cell in the same euclidean space with genes close to a particular cell or group of cells being specificly expressed in those. This property allows to get a ranking of specificity of genes for each cells giving the opportunity to extract meaningful geneset or perform geneset enrichment analysis.

Author(s)

Maintainer: Akira Cortal akira.cortal@institutimagine.org

Authors:

References

See Also


cbl-imagine/cellID documentation built on July 24, 2020, 9:35 p.m.