cellID-package: Multiple Correspondence Analysis on Single Cell for Joint...

Description Author(s) References See Also


CellID take as input a matrix of expression level generated by SCRNA-Seq and performs dimensionality reduction using Multiple Corespondance Analysis. This enables a representation of both genes and cell in the same euclidean space with genes close to a particular cell or group of cells being specificly expressed in those. This property allows to get a ranking of specificity of genes for each cells giving the opportunity to extract meaningful geneset or perform geneset enrichment analysis.


Maintainer: Akira Cortal [email protected]



See Also

cbl-imagine/cellID documentation built on Nov. 12, 2019, 1:36 a.m.