inst/examples/README.md

In cboettig/wrightscape: wrightscape

Examples

This is an active research working directory. These examples will continue to evolve.

• simulate_release.md Create a plot visualizing the different models
• labrid_mc.md fit each model for the set of interesting traits and return the parameter estimates (no bootstrapping/uncertainty estimation) for the Labrid dataset.
• labrid_data.md Example of pre-processing the labrid data for the phylogenetic analysis.
• labrid_power.md Example of full model-choice between candidate models.
• labrid_par_bootstrap.md Runs replicate model fits to get parameter distributions but not replicate model choice. Faster than labrid_power.md but slower than labrid_mc.md.

Data files

• labrid_mc.rda
• labrid_power.rda
• labrid_par_bootstrap.rda
• labrid_data.rda

These links point only to the most recent copy of the output data file from the scripts listed above. Previous versions of the data must be regenerated by rerunning earlier versions of the code. See the repository history on github.

Footnotes

This readme is a manually curated index to this project. No automated scripts keep it up to date.

All content from Carl Boettiger, [e-mail] made available as part of my Open Lab Notebook, and is released under a Creative Commons Zero License.

(Please recall that attribution is an academic norm, and plagiarism of public domain is still plagiarism. Please include citations where appropriate.)

cboettig/wrightscape documentation built on May 13, 2019, 2:12 p.m.