Files in cboettig/wrightscape
wrightscape
DESCRIPTION
INSTALL
LICENSE
NAMESPACE
R/.svn/entries
R/.svn/text-base/traitmodels.R.svn-base
R/OUwietools.R
R/bootstrap.R
R/custom.R
R/data.R
R/depricated.R
R/format_data.R
R/likelihood.R
R/maticce.R
R/mcmc.R
R/methods.R
R/plots.R
R/prior_library.R
R/simulate_release.R
R/treeformats.R
R/wrightscape.R
README.md
cleanup
configure
configure.ac
data/Primate_brain_comparisons.csv
data/labrid/findata_labrid.csv
data/labrid/findata_labrid.xls
data/labrid/findatatree.nex
data/labrid/labrid.csv
data/labrid/labridData.txt
data/labrid/labrid_herbivory.csv
data/labrid/labrid_herbivory.xls
data/labrid/labriddata_parrotfish.xls
data/labrid_tree.nex
data/labriddata_parrotfish.csv
data/labrids.rda
data/parrotfish.rda
demo/anoles.R
demo/auteur_labrids.R
demo/carnivora_power.R
demo/dataset_examples/anoles.R
demo/dataset_examples/ape_example.R
demo/dataset_examples/carnivora.R
demo/dataset_examples/carnivora2.R
demo/dataset_examples/cetacea.R
demo/dataset_examples/cetaceans.R
demo/dataset_examples/geiger_demo.R
demo/dataset_examples/mammalia.R
demo/dataset_examples/parrotfish.R
demo/dataset_examples/parrotfish_data.R
demo/dataset_examples/parrotfish_mc.R
demo/dataset_examples/parrotfish_mcmc.R
demo/dataset_examples/parrotfish_power.R
demo/dataset_examples/sedges.R
demo/final_plots.R
demo/method2/method2.R
demo/method2/method2_labrid_intra.R
demo/method2/method2_labrid_phar.R
demo/method2/method2_parrotfish.R
demo/method2/method2_plot.R
demo/method2/method2_subplot.R
demo/method2/method2_tools.R
demo/parrotfish_power.R
demo/power_plot.R
demo/primates.R
demo/sim_mc.R
demo/simulate_release.R
demo/simulation.R
demo/treeplot.R
demo/unit_tests/unit_test2.R
demo/unit_tests/unit_test3.R
demo/unit_tests/unit_test4.R
demo/unit_tests/unit_test5.R
demo/unit_tests/unit_test6.R
demo/unit_tests/unit_test7.R
demo/unit_tests/unit_tests.R
inst/doc/Makefile
inst/doc/elsarticle.latex
inst/doc/figures.Rmd
inst/doc/figures.md
inst/doc/knit
inst/doc/wrightscape.Rmd
inst/doc/wrightscape.bib
inst/doc/wrightscape.md
inst/doc/wrightscape.rda
inst/doc/wrightscape.tex
inst/doc/wrightscape_github.md
inst/examples/README.md
inst/examples/focal_examples.md
inst/examples/focal_examples_knit_.md
inst/examples/knitsettings.R
inst/examples/labrid_data.md
inst/examples/labrid_data_knit_.md
inst/examples/labrid_mc.md
inst/examples/labrid_mc_knit_.md
inst/examples/labrid_mcmc.R
inst/examples/labrid_par_bootstrap.md
inst/examples/labrid_par_bootstrap_knit_.md
inst/examples/labrid_power.md
inst/examples/labrid_power_knit_.md
inst/examples/manuscript.Rmd
inst/examples/manuscript.md
inst/examples/misc_examples/anoles.R
inst/examples/misc_examples/auteur_labrids.R
inst/examples/misc_examples/mietchen.md
inst/examples/misc_examples/mietchen_knit_.md
inst/examples/misc_examples/primates.R
inst/examples/misc_examples/sim_mc_knit_.md
inst/examples/misc_examples/treeplot.R
inst/examples/misc_examples/tutorial_with_simulated_traits.md
inst/examples/misc_examples/tutorial_with_simulated_traits_knit_.md
inst/examples/parrotfish/parrotfish_power.md
inst/examples/parrotfish/parrotfish_power_knit_.md
inst/examples/plots.Rmd
inst/examples/simulate_release.md
inst/examples/simulate_release_knit_.md
man/bm_path_sim.Rd
man/bootstrap.Rd
man/bootstrap.multiOU.Rd
man/brownie_path_sim.Rd
man/convert.Rd
man/custom.llik.closure.Rd
man/custom_multiType.Rd
man/evaluate_likelihood.Rd
man/format_data.Rd
man/getParameters.Rd
man/getParameters.multiOU.Rd
man/getParameters.wrighttree.Rd
man/get_clade.Rd
man/get_indices.Rd
man/labrids.Rd
man/lca_calc.Rd
man/llik.closure.Rd
man/loglik.multiOU.Rd
man/loglik.wrighttree.Rd
man/mrcaOUCH.Rd
man/multiOU_lik_lca.Rd
man/multiTypeOU.Rd
man/ou_path_sim.Rd
man/paintBranches.Rd
man/paint_phy.Rd
man/parrotfish.Rd
man/release_path_sim.Rd
man/setup_pars.Rd
man/simulate.multiOU.Rd
man/simulate.wrighttree.Rd
man/summary.multiOU.Rd
man/tip_plot.Rd
man/update.multiOU.Rd
man/wrightscape.Rd
src/.svn/entries
src/.svn/prop-base/regimes.c.svn-base
src/.svn/text-base/Makevars.svn-base
src/.svn/text-base/README.svn-base
src/.svn/text-base/jointprob.c.svn-base
src/.svn/text-base/linearsoln.c.svn-base
src/.svn/text-base/makefile.svn-base
src/.svn/text-base/matrix_method.c.svn-base
src/.svn/text-base/multimin.c.svn-base
src/.svn/text-base/regimes.c.svn-base
src/.svn/text-base/siman.c.svn-base
src/.svn/text-base/tree.c.svn-base
src/.svn/text-base/tree.h.svn-base
src/Makevars
src/airy.c
src/callgrind.out.13907
src/likelihood.c
src/likelihood.h
src/makefile
src/multimin.c
src/mvn.c
src/mvn.h
src/nersc_makevars
src/optimizers.h
src/piecewise_regimes.c
src/siman.c
src/standard_makevars
