Description Usage Arguments Details Value
Fits the generic multitype OU.
1 2 3 |
data |
the trait data |
tree |
the phylogenetic tree in ouch format |
regimes |
the regimes in ouch format |
model_spec |
a list that specifies the model, see details |
Xo |
root state |
alpha |
a vector of length n_regimes if indep in model, or a scalar |
sigma |
a vector of length n_regimes if indep in model, or a scalar |
theta |
a vector of length n_regimes if indep in model, or a scalar |
Submodels such as brownie, and other unique models, can be created by specifiying how parameters are treated under model_spec get the likelihood of the specified model using the specified parameters
log likelihood
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