multiTypeOU: Fits the generic multitype OU.
In cboettig/wrightscape: wrightscape

Description Usage Arguments Details Value

Fits the generic multitype OU.

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  multiTypeOU(data, tree, regimes,
    model_spec = list(alpha = "indep", sigma = "indep", theta = "indep"),
    Xo = NULL, alpha = 1, sigma = 1, theta = NULL, ...)

`data`	the trait data
`tree`	the phylogenetic tree in ouch format
`regimes`	the regimes in ouch format
`model_spec`	a list that specifies the model, see details
`Xo`	root state
`alpha`	a vector of length n_regimes if indep in model, or a scalar
`sigma`	a vector of length n_regimes if indep in model, or a scalar
`theta`	a vector of length n_regimes if indep in model, or a scalar

Submodels such as brownie, and other unique models, can be created by specifiying how parameters are treated under model_spec get the likelihood of the specified model using the specified parameters

log likelihood

cboettig/wrightscape documentation built on May 13, 2019, 2:12 p.m.