bioplex2graph: Representation of BioPlex PPIs in a graph data structure

View source: R/bioplex.R

bioplex2graphR Documentation

Representation of BioPlex PPIs in a graph data structure

Description

Representation of BioPlex PPIs in a graphNEL object from the graph package.

Usage

bioplex2graph(bioplex.df)

Arguments

bioplex.df

a data.frame storing the Bioplex PPIs in a flat from-to format. Typically obtained via getBioPlex.

Value

An object of class graphNEL.

References

BioPlex: https://bioplex.hms.harvard.edu/interactions.php

See Also

getBioPlex, ftM2graphNEL

Examples

# (1) Obtain the latest version of the 293T PPI network
bp.293t <- getBioPlex(cell.line = "293T", version = "3.0")

# (2) Turn the data into a graph 
bp.gr <- bioplex2graph(bp.293t)


ccb-hms/BioPlex documentation built on July 20, 2022, 9:16 a.m.