hasSubunit: Identify CORUM complexes that have a subunit of interest

In ccb-hms/BioPlex: R-side access to BioPlex protein-protein interaction data

Identify CORUM complexes that have a subunit of interest

Description

Screens a list of graph instances storing CORUM protein complex data for a subunit of choice.

Usage

hasSubunit(glist, subunit, id.type = "SYMBOL")

Arguments

glist	A list of graphs storing CORUM complexes. Typically obtained via corum2graphlist.
subunit	character. A gene ID corresponding to the subunit of interest.
id.type	character. Gene ID type of the given subunit. Defaults to "SYMBOL".

Value

A logical vector indicating which graphs have a node with the given subunit.

Examples

# (1) Obtain the core set of CORUM complexes ...
core <- getCorum(set = "core")

# (2) ... turn into a list of graphs ...
core.glist <- corum2graphlist(core)

# (3) .. check for a particular subunit of interest
has.cdk2 <- hasSubunit(core.glist, subunit = "CDK2")

ccb-hms/BioPlex documentation built on Aug. 5, 2023, 9:15 p.m.