corum2graphlist | R Documentation |
Functionality for storing CORUM protein complex data in a
list
of graph
instances.
corum2graphlist(corum.df, subunit.id.type = c("UNIPROT", "ENTREZID"))
corum.df |
A |
subunit.id.type |
character. Supported options include |
A list
with an entry for each complex. Each entry is an
object of class graphNEL
connecting all subunit IDs with each other
by undirected edges.
CORUM: http://mips.helmholtz-muenchen.de/corum/#download
# (1) Obtain the core set of CORUM complexes ...
core <- getCorum(set = "core")
# (2) ... turn into a list of graphs
core.glist <- corum2graphlist(core)
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