Collection of public MERFISH datasets
Make sure to have the latest release version of R installed.
Then proceed from within R via:
if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install(version = "devel") BiocManager::valid()
This is necessary as the
MerfishData package uses resources from ExperimentHub
that are currently only available in the development version of Bioconductor.
The package itself can then be installed via:
NOTE: you will need the
remotes package to install from github.
To build the package vignettes upon installation use:
BiocManager::install("ccb-hms/MerfishData", build_vignettes = TRUE, dependencies = TRUE)
Once you have the package installed, you can inspect the vignettes from within R via:
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