README.md

In ccb-hms/MerfishData: Collection of public MERFISH datasets

MerfishData

Collection of public MERFISH datasets

Installation

Installation from Bioconductor

The package is available from Bioconductor. Please follow the installation instructions on the package landing page to install the package.

Installation from GitHub

Make sure to have the latest release version of R installed.

Then proceed from within R via:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "devel")
BiocManager::valid()

to install the BiocManager package and to use the development version of Bioconductor.

This is necessary as the MerfishData package uses resources from ExperimentHub that are currently only available in the development version of Bioconductor.

The package itself can then be installed via:

BiocManager::install("ccb-hms/MerfishData")

NOTE: you will need the remotes package to install from github.

To build the package vignettes upon installation use:

BiocManager::install("ccb-hms/MerfishData",
                     build_vignettes = TRUE,
                     dependencies = TRUE)

Once you have the package installed, you can inspect the vignettes from within R via:

browseVignettes("MerfishData")

ccb-hms/MerfishData documentation built on June 30, 2024, 8:14 p.m.